J4_5NDJ_014
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- GGGC*GAC*GGAAG*CGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5NDJ_014 not in the Motif Atlas
- Homologous match to J4_9DFE_010
- Geometric discrepancy: 0.0832
- The information below is about J4_9DFE_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.4
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5NDJ|1|14|G|2658
5NDJ|1|14|G|2659
5NDJ|1|14|G|2660
5NDJ|1|14|C|2661
*
5NDJ|1|14|G|2689
5NDJ|1|14|A|2690
5NDJ|1|14|C|2691
*
5NDJ|1|14|G|2747
5NDJ|1|14|G|2748
5NDJ|1|14|A|2749
5NDJ|1|14|A|2750
5NDJ|1|14|G|2751
*
5NDJ|1|14|C|2785
5NDJ|1|14|G|2786
5NDJ|1|14|C|2787
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L13
- Chain 25
- 50S ribosomal protein L14
- Chain 29
- 50S ribosomal protein L3
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