J4_5NDW_002
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CUAUG*CGUC*GAG*CGUGUG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5NDW_002 not in the Motif Atlas
- Homologous match to J4_8P9A_013
- Geometric discrepancy: 0.0741
- The information below is about J4_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_43318.1
- Basepair signature
- cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5NDW|1|1|C|185
5NDW|1|1|U|186
5NDW|1|1|A|187
5NDW|1|1|U|188
5NDW|1|1|G|189
*
5NDW|1|1|C|205
5NDW|1|1|G|206
5NDW|1|1|U|207
5NDW|1|1|C|208
*
5NDW|1|1|G|212
5NDW|1|1|A|213
5NDW|1|1|G|214
*
5NDW|1|1|C|226
5NDW|1|1|G|227
5NDW|1|1|U|228
5NDW|1|1|G|229
5NDW|1|1|U|230
5NDW|1|1|G|231
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain L4
- 60S ribosomal protein L4-A
- Chain N6
- 60S ribosomal protein L26-A
Coloring options: