J4_5NDW_018
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5NDW_018 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0594
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
5NDW|1|5|G|2130
5NDW|1|5|A|2131
5NDW|1|5|C|2132
5NDW|1|5|U|2133
5NDW|1|5|G|2134
*
5NDW|1|5|C|2146
5NDW|1|5|A|2147
5NDW|1|5|U|2148
5NDW|1|5|A|2149
5NDW|1|5|G|2150
*
5NDW|1|5|U|2186
5NDW|1|5|G|2187
5NDW|1|5|A|2188
5NDW|1|5|U|2189
5NDW|1|5|U|2190
*
5NDW|1|5|A|2317
5NDW|1|5|U|2318
5NDW|1|5|U|2319
5NDW|1|5|A|2320
5NDW|1|5|A|2321
5NDW|1|5|C|2322
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 6
- Small subunit ribosomal RNA; SSU rRNA
- Chain l2
- 60S ribosomal protein L2-A
- Chain q1
- 60S ribosomal protein L41-A
- Chain q3
- 60S ribosomal protein L43-A
Coloring options: