J4_5NG8_006

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NG8_006 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.1169

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5NG8|1|AA|G|1799
5NG8|1|AA|A|1800
5NG8|1|AA|C|1801
5NG8|1|AA|U|1802
5NG8|1|AA|G|1803
*
5NG8|1|AA|C|1815
5NG8|1|AA|A|1816
5NG8|1|AA|C|1817
5NG8|1|AA|A|1818
5NG8|1|AA|G|1819
*
5NG8|1|AA|U|1854
5NG8|1|AA|G|1855
5NG8|1|AA|A|1856
5NG8|1|AA|C|1857
*
5NG8|1|AA|G|2002
5NG8|1|AA|U|2003
5NG8|1|AA|A|2004
5NG8|1|AA|A|2005
5NG8|1|AA|C|2006

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L2