J4_5NG8_012

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

5NG8|1|BA|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NG8_012 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.1896

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

5NG8|1|BA|C|271
5NG8|1|BA|C|272
*
5NG8|1|BA|G|416
5NG8|1|BA|A|417
5NG8|1|BA|G|418
5NG8|1|BA|U|419
5NG8|1|BA|A|420
5NG8|1|BA|C|421
*
5NG8|1|BA|G|445
5NG8|1|BA|G|446
5NG8|1|BA|A|447
5NG8|1|BA|A|448
5NG8|1|BA|U|449
5NG8|1|BA|C|450
5NG8|1|BA|U|451
5NG8|1|BA|G|452
*
5NG8|1|BA|U|467
5NG8|1|BA|A|468
5NG8|1|BA|A|469
5NG8|1|BA|G|470

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BV

50S ribosomal protein L28