J4_5NG8_013

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CGAAU*AAUC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NG8_013 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1154

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

5NG8|1|BA|C|340
5NG8|1|BA|G|341
5NG8|1|BA|A|342
5NG8|1|BA|A|343
5NG8|1|BA|U|344
*
5NG8|1|BA|A|359
5NG8|1|BA|A|360
5NG8|1|BA|U|361
5NG8|1|BA|C|362
*
5NG8|1|BA|G|366
5NG8|1|BA|A|367
5NG8|1|BA|A|368
*
5NG8|1|BA|U|380
5NG8|1|BA|G|381
5NG8|1|BA|U|382
5NG8|1|BA|A|383
5NG8|1|BA|G|384

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BS

50S ribosomal protein L24