J4_5NG8_016

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

5NG8|1|BA|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NG8_016 not in the Motif Atlas

Homologous match to J4_7A0S_005

Geometric discrepancy: 0.1293

The information below is about J4_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5NG8|1|BA|G|1347
5NG8|1|BA|U|1348
5NG8|1|BA|U|1349
5NG8|1|BA|U|1350
5NG8|1|BA|C|1351
*
5NG8|1|BA|G|1375
5NG8|1|BA|G|1376
5NG8|1|BA|U|1377
5NG8|1|BA|U|1378
5NG8|1|BA|A|1379
5NG8|1|BA|G|1380
*
5NG8|1|BA|C|1441
5NG8|1|BA|C|1442
*
5NG8|1|BA|G|1641
5NG8|1|BA|C|1642
5NG8|1|BA|C|1643
5NG8|1|BA|C|1644
5NG8|1|BA|G|1645
5NG8|1|BA|U|1646
5NG8|1|BA|A|1647
5NG8|1|BA|C|1648

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BR

50S ribosomal protein L23