J4_5NGM_002

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAU*AAUC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NGM_002 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0867

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

5NGM|1|AA|C|340
5NGM|1|AA|G|341
5NGM|1|AA|A|342
5NGM|1|AA|A|343
5NGM|1|AA|U|344
*
5NGM|1|AA|A|359
5NGM|1|AA|A|360
5NGM|1|AA|U|361
5NGM|1|AA|C|362
*
5NGM|1|AA|G|366
5NGM|1|AA|A|367
5NGM|1|AA|A|368
*
5NGM|1|AA|U|380
5NGM|1|AA|G|381
5NGM|1|AA|U|382
5NGM|1|AA|A|383
5NGM|1|AA|G|384

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L4

Chain AS

50S ribosomal protein L24