J4_5NGM_003

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CGUAG*CGAG*CGUUUAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NGM_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.4384

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

5NGM|1|AA|C|644
5NGM|1|AA|A|645
5NGM|1|AA|A|646
5NGM|1|AA|G|647
*
5NGM|1|AA|C|669
5NGM|1|AA|G|670
5NGM|1|AA|U|671
5NGM|1|AA|A|672
5NGM|1|AA|G|673
*
5NGM|1|AA|C|680
5NGM|1|AA|G|681
5NGM|1|AA|A|682
5NGM|1|AA|G|683
*
5NGM|1|AA|C|695
5NGM|1|AA|G|696
5NGM|1|AA|U|697
5NGM|1|AA|U|698
5NGM|1|AA|U|699
5NGM|1|AA|A|700
5NGM|1|AA|G|701

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A3

50S ribosomal protein L35

Chain AE

50S ribosomal protein L4

Chain AJ

50S ribosomal protein L15