J4_5NGM_004

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAAG*CC*GAGCG*CGG

Length

16 nucleotides

Bulged bases

5NGM|1|AA|G|1309, 5NGM|1|AA|A|1310, 5NGM|1|AA|G|1691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NGM|1|AA|C|1308
5NGM|1|AA|G|1309
5NGM|1|AA|A|1310
5NGM|1|AA|A|1311
5NGM|1|AA|A|1312
5NGM|1|AA|G|1313
*
5NGM|1|AA|C|1331
5NGM|1|AA|C|1332
*
5NGM|1|AA|G|1689
5NGM|1|AA|A|1690
5NGM|1|AA|G|1691
5NGM|1|AA|C|1692
5NGM|1|AA|G|1693
*
5NGM|1|AA|C|2035
5NGM|1|AA|G|2036
5NGM|1|AA|G|2037

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AL

50S ribosomal protein L17

Chain AQ

50S ribosomal protein L22

Chain AZ

50S ribosomal protein L32