J4_5NGM_007

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGC*GCG*CCUAAGGUAGC*GCACGAAAG

Length

27 nucleotides

Bulged bases

5NGM|1|AA|A|1998

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NGM|1|AA|C|1860
5NGM|1|AA|U|1861
5NGM|1|AA|G|1862
5NGM|1|AA|C|1863
*
5NGM|1|AA|G|1931
5NGM|1|AA|C|1932
5NGM|1|AA|G|1933
*
5NGM|1|AA|C|1951
5NGM|1|AA|C|1952
5NGM|1|AA|U|1953
5NGM|1|AA|A|1954
5NGM|1|AA|A|1955
5NGM|1|AA|G|1956
5NGM|1|AA|G|1957
5NGM|1|AA|U|1958
5NGM|1|AA|A|1959
5NGM|1|AA|G|1960
5NGM|1|AA|C|1961
*
5NGM|1|AA|G|1991
5NGM|1|AA|C|1992
5NGM|1|AA|A|1993
5NGM|1|AA|C|1994
5NGM|1|AA|G|1995
5NGM|1|AA|A|1996
5NGM|1|AA|A|1997
5NGM|1|AA|A|1998
5NGM|1|AA|G|1999

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L2

Chain Aa

Small subunit ribosomal RNA; SSU rRNA