J4_5NGM_008

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAAGG*CUUGAC*GGG*CGG

Length

18 nucleotides

Bulged bases

5NGM|1|AA|G|2409

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NGM|1|AA|C|2312
5NGM|1|AA|A|2313
5NGM|1|AA|A|2314
5NGM|1|AA|A|2315
5NGM|1|AA|G|2316
5NGM|1|AA|G|2317
*
5NGM|1|AA|C|2369
5NGM|1|AA|U|2370
5NGM|1|AA|U|2371
5NGM|1|AA|G|2372
5NGM|1|AA|A|2373
5NGM|1|AA|C|2374
*
5NGM|1|AA|G|2397
5NGM|1|AA|G|2398
5NGM|1|AA|G|2399
*
5NGM|1|AA|C|2408
5NGM|1|AA|G|2409
5NGM|1|AA|G|2410

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L33

Chain A3

50S ribosomal protein L35

Chain AU

50S ribosomal protein L27