J4_5NGM_010

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGUAACAC*GCU*AUAG*CC

Length

18 nucleotides

Bulged bases

5NGM|1|Aa|C|120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NGM|1|Aa|G|114
5NGM|1|Aa|A|115
5NGM|1|Aa|G|116
5NGM|1|Aa|U|117
5NGM|1|Aa|A|118
5NGM|1|Aa|A|119
5NGM|1|Aa|C|120
5NGM|1|Aa|A|121
5NGM|1|Aa|C|122
*
5NGM|1|Aa|G|246
5NGM|1|Aa|C|247
5NGM|1|Aa|U|248
*
5NGM|1|Aa|A|294
5NGM|1|Aa|U|295
5NGM|1|Aa|A|296
5NGM|1|Aa|G|297
*
5NGM|1|Aa|C|319
5NGM|1|Aa|C|320

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Al

30S ribosomal protein S12

Chain Ap

30S ribosomal protein S16

Chain Aq

30S ribosomal protein S17