J4_5NGM_011
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 5NGM|1|Aa|C|584, 5NGM|1|Aa|A|823, 5NGM|1|Aa|C|825, 5NGM|1|Aa|A|827
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5NGM_011 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0782
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
5NGM|1|Aa|G|583
5NGM|1|Aa|C|584
5NGM|1|Aa|G|585
*
5NGM|1|Aa|C|772
5NGM|1|Aa|G|773
5NGM|1|Aa|A|774
5NGM|1|Aa|A|775
5NGM|1|Aa|A|776
5NGM|1|Aa|G|777
*
5NGM|1|Aa|C|818
5NGM|1|Aa|C|819
5NGM|1|Aa|G|820
5NGM|1|Aa|U|821
5NGM|1|Aa|A|822
5NGM|1|Aa|A|823
5NGM|1|Aa|A|824
5NGM|1|Aa|C|825
5NGM|1|Aa|G|826
5NGM|1|Aa|A|827
5NGM|1|Aa|U|828
5NGM|1|Aa|G|829
*
5NGM|1|Aa|C|888
5NGM|1|Aa|C|889
Current chains
- Chain Aa
- 16S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ah
- 30S ribosomal protein S8
- Chain Al
- 30S ribosomal protein S12
- Chain Ao
- 30S ribosomal protein S15
- Chain Aq
- 30S ribosomal protein S17
- Chain Au
- 30S ribosomal protein S21
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