J4_5NJT_001

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGUAACAC*GGC*GUAG*CC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NJT|1|A|G|113
5NJT|1|A|A|114
5NJT|1|A|G|115
5NJT|1|A|U|116
5NJT|1|A|A|117
5NJT|1|A|A|118
5NJT|1|A|C|119
5NJT|1|A|A|120
5NJT|1|A|C|121
*
5NJT|1|A|G|246
5NJT|1|A|G|247
5NJT|1|A|C|248
*
5NJT|1|A|G|294
5NJT|1|A|U|295
5NJT|1|A|A|296
5NJT|1|A|G|297
*
5NJT|1|A|C|319
5NJT|1|A|C|320

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17