J4_5NJT_005

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAG*CGCC*GGA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NJT_005 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.1685

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

5NJT|1|U|U|340
5NJT|1|U|G|341
5NJT|1|U|A|342
5NJT|1|U|A|343
5NJT|1|U|G|344
*
5NJT|1|U|C|360
5NJT|1|U|G|361
5NJT|1|U|C|362
5NJT|1|U|C|363
*
5NJT|1|U|G|367
5NJT|1|U|G|368
5NJT|1|U|A|369
*
5NJT|1|U|U|381
5NJT|1|U|G|382
5NJT|1|U|U|383
5NJT|1|U|A|384
5NJT|1|U|G|385

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L4

Chain n

50S ribosomal protein L24