J4_5NJT_006
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAAG*CGCAG*CGAG*CGCAUGAG
- Length
- 21 nucleotides
- Bulged bases
- 5NJT|1|U|A|683
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5NJT_006 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.4765
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5NJT|1|U|C|645
5NJT|1|U|A|646
5NJT|1|U|A|647
5NJT|1|U|G|648
*
5NJT|1|U|C|670
5NJT|1|U|G|671
5NJT|1|U|C|672
5NJT|1|U|A|673
5NJT|1|U|G|674
*
5NJT|1|U|C|681
5NJT|1|U|G|682
5NJT|1|U|A|683
5NJT|1|U|G|684
*
5NJT|1|U|C|696
5NJT|1|U|G|697
5NJT|1|U|C|698
5NJT|1|U|A|699
5NJT|1|U|U|700
5NJT|1|U|G|701
5NJT|1|U|A|702
5NJT|1|U|G|703
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain Y
- 50S ribosomal protein L4
- Chain e
- 50S ribosomal protein L15
- Chain s
- 50S ribosomal protein L35
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