J4_5NJT_007
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAAAG*CC*GAUC*GG
- Length
- 14 nucleotides
- Bulged bases
- 5NJT|1|U|G|1311, 5NJT|1|U|A|1312, 5NJT|1|U|U|1692
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5NJT_007 not in the Motif Atlas
- Homologous match to J4_4WF9_004
- Geometric discrepancy: 0.1824
- The information below is about J4_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.6
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
5NJT|1|U|C|1310
5NJT|1|U|G|1311
5NJT|1|U|A|1312
5NJT|1|U|A|1313
5NJT|1|U|A|1314
5NJT|1|U|G|1315
*
5NJT|1|U|C|1333
5NJT|1|U|C|1334
*
5NJT|1|U|G|1690
5NJT|1|U|A|1691
5NJT|1|U|U|1692
5NJT|1|U|C|1693
*
5NJT|1|U|G|2038
5NJT|1|U|G|2039
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain g
- 50S ribosomal protein L17
- Chain l
- 50S ribosomal protein L22
- Chain p
- 50S ribosomal protein L32
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