J4_5NJT_012

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

5NJT|1|U|A|2000

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NJT_012 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1363

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

5NJT|1|U|C|1862
5NJT|1|U|U|1863
5NJT|1|U|G|1864
*
5NJT|1|U|C|1934
5NJT|1|U|G|1935
*
5NJT|1|U|C|1953
5NJT|1|U|C|1954
5NJT|1|U|U|1955
5NJT|1|U|A|1956
5NJT|1|U|A|1957
5NJT|1|U|G|1958
5NJT|1|U|G|1959
5NJT|1|U|U|1960
5NJT|1|U|A|1961
5NJT|1|U|G|1962
*
5NJT|1|U|C|1996
5NJT|1|U|G|1997
5NJT|1|U|A|1998
5NJT|1|U|A|1999
5NJT|1|U|A|2000
5NJT|1|U|G|2001

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain W

50S ribosomal protein L2