J4_5NO2_001

3D structure

PDB id

5NO2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

5NO2|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NO2_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1819

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5NO2|1|A|G|115
5NO2|1|A|A|116
5NO2|1|A|G|117
5NO2|1|A|U|118
5NO2|1|A|A|119
5NO2|1|A|A|120
5NO2|1|A|U|121
5NO2|1|A|G|122
*
5NO2|1|A|U|239
5NO2|1|A|G|240
*
5NO2|1|A|C|286
5NO2|1|A|U|287
5NO2|1|A|A|288
5NO2|1|A|G|289
*
5NO2|1|A|C|311
5NO2|1|A|C|312

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17