J4_5NO2_004

3D structure

PDB id

5NO2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5NO2|1|A|C|183, 5NO2|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NO2_004 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1377

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5NO2|1|A|G|142
5NO2|1|A|A|143
5NO2|1|A|G|144
*
5NO2|1|A|C|178
5NO2|1|A|A|179
5NO2|1|A|U|180
5NO2|1|A|A|181
5NO2|1|A|A|182
5NO2|1|A|C|183
5NO2|1|A|G|184
*
5NO2|1|A|C|193
5NO2|1|A|C|194
5NO2|1|A|A|195
5NO2|1|A|A|196
5NO2|1|A|A|197
5NO2|1|A|G|198
*
5NO2|1|A|U|219
5NO2|1|A|G|220
5NO2|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20