J4_5NO4_003
3D structure
- PDB id
- 5NO4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate with uS3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.16 Å
Loop
- Sequence
- GCG*CGAAAGC*GCCGUAAACGAUG*CC
- Length
- 25 nucleotides
- Bulged bases
- 5NO4|1|A|C|576, 5NO4|1|A|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5NO4|1|A|G|575
5NO4|1|A|C|576
5NO4|1|A|G|577
*
5NO4|1|A|C|764
5NO4|1|A|G|765
5NO4|1|A|A|766
5NO4|1|A|A|767
5NO4|1|A|A|768
5NO4|1|A|G|769
5NO4|1|A|C|770
*
5NO4|1|A|G|809
5NO4|1|A|C|810
5NO4|1|A|C|811
5NO4|1|A|G|812
5NO4|1|A|U|813
5NO4|1|A|A|814
5NO4|1|A|A|815
5NO4|1|A|A|816
5NO4|1|A|C|817
5NO4|1|A|G|818
5NO4|1|A|A|819
5NO4|1|A|U|820
5NO4|1|A|G|821
*
5NO4|1|A|C|879
5NO4|1|A|C|880
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain H
- 30S ribosomal protein S8
- Chain L
- 30S ribosomal protein S12
- Chain O
- 30S ribosomal protein S15
- Chain Q
- 30S ribosomal protein S17
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