J4_5NO4_004
3D structure
- PDB id
- 5NO4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate with uS3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.16 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 5NO4|1|A|C|576, 5NO4|1|A|A|815
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5NO4_004 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.1004
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
5NO4|1|A|G|575
5NO4|1|A|C|576
5NO4|1|A|G|577
*
5NO4|1|A|C|764
5NO4|1|A|G|765
5NO4|1|A|A|766
5NO4|1|A|A|767
5NO4|1|A|A|768
5NO4|1|A|G|769
*
5NO4|1|A|C|810
5NO4|1|A|C|811
5NO4|1|A|G|812
5NO4|1|A|U|813
5NO4|1|A|A|814
5NO4|1|A|A|815
5NO4|1|A|A|816
5NO4|1|A|C|817
5NO4|1|A|G|818
5NO4|1|A|A|819
5NO4|1|A|U|820
5NO4|1|A|G|821
*
5NO4|1|A|C|879
5NO4|1|A|C|880
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain H
- 30S ribosomal protein S8
- Chain L
- 30S ribosomal protein S12
- Chain O
- 30S ribosomal protein S15
- Chain Q
- 30S ribosomal protein S17
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