J4_5NP6_006
3D structure
- PDB id
- 5NP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S structure prior to bypassing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAAG*CGAAG*CGAG*CGUUAAG
- Length
- 20 nucleotides
- Bulged bases
- 5NP6|1|Y|U|653, 5NP6|1|Y|A|654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5NP6_006 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.2159
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5NP6|1|Y|C|601
5NP6|1|Y|A|602
5NP6|1|Y|A|603
5NP6|1|Y|G|604
*
5NP6|1|Y|C|624
5NP6|1|Y|G|625
5NP6|1|Y|A|626
5NP6|1|Y|A|627
5NP6|1|Y|G|628
*
5NP6|1|Y|C|635
5NP6|1|Y|G|636
5NP6|1|Y|A|637
5NP6|1|Y|G|638
*
5NP6|1|Y|C|650
5NP6|1|Y|G|651
5NP6|1|Y|U|652
5NP6|1|Y|U|653
5NP6|1|Y|A|654
5NP6|1|Y|A|655
5NP6|1|Y|G|656
Current chains
- Chain Y
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L35
- Chain c
- 50S ribosomal protein L4
- Chain j
- 50S ribosomal protein L15
Coloring options: