J4_5NP6_008

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

5NP6|1|Y|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NP6_008 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1326

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5NP6|1|Y|G|1310
5NP6|1|Y|G|1311
5NP6|1|Y|U|1312
5NP6|1|Y|U|1313
5NP6|1|Y|C|1314
*
5NP6|1|Y|G|1338
5NP6|1|Y|G|1339
5NP6|1|Y|U|1340
5NP6|1|Y|G|1341
5NP6|1|Y|A|1342
5NP6|1|Y|G|1343
*
5NP6|1|Y|C|1404
5NP6|1|Y|U|1405
*
5NP6|1|Y|A|1597
5NP6|1|Y|A|1598
5NP6|1|Y|U|1599
5NP6|1|Y|C|1600
5NP6|1|Y|G|1601
5NP6|1|Y|U|1602
5NP6|1|Y|A|1603
5NP6|1|Y|C|1604

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34

Chain r

50S ribosomal protein L23