J4_5NP6_012

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

5NP6|1|Y|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NP6_012 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1345

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5NP6|1|Y|C|1833
5NP6|1|Y|U|1834
5NP6|1|Y|2MG|1835
*
5NP6|1|Y|C|1905
5NP6|1|Y|G|1906
*
5NP6|1|Y|C|1924
5NP6|1|Y|C|1925
5NP6|1|Y|U|1926
5NP6|1|Y|A|1927
5NP6|1|Y|A|1928
5NP6|1|Y|G|1929
5NP6|1|Y|G|1930
5NP6|1|Y|U|1931
5NP6|1|Y|A|1932
5NP6|1|Y|G|1933
*
5NP6|1|Y|C|1967
5NP6|1|Y|G|1968
5NP6|1|Y|A|1969
5NP6|1|Y|A|1970
5NP6|1|Y|U|1971
5NP6|1|Y|G|1972

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain B

Transfer RNA; tRNA

Chain D

Small subunit ribosomal RNA; SSU rRNA

Chain a

50S ribosomal protein L2