J4_5NRG_004

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CGAAAG*CC*GAGC*GG

Length

14 nucleotides

Bulged bases

5NRG|1|X|G|1309, 5NRG|1|X|A|1310, 5NRG|1|X|A|1312, 5NRG|1|X|G|1691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NRG_004 not in the Motif Atlas

Homologous match to J4_4WF9_004

Geometric discrepancy: 0.0882

The information below is about J4_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

5NRG|1|X|C|1308
5NRG|1|X|G|1309
5NRG|1|X|A|1310
5NRG|1|X|A|1311
5NRG|1|X|A|1312
5NRG|1|X|G|1313
*
5NRG|1|X|C|1331
5NRG|1|X|C|1332
*
5NRG|1|X|G|1689
5NRG|1|X|A|1690
5NRG|1|X|G|1691
5NRG|1|X|C|1692
*
5NRG|1|X|G|2036
5NRG|1|X|G|2037

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L17

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32