J4_5NRG_006

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

UC*GGUUAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

5NRG|1|X|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NRG_006 not in the Motif Atlas

Homologous match to J4_4WF9_006

Geometric discrepancy: 0.0734

The information below is about J4_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5NRG|1|X|U|1350
5NRG|1|X|C|1351
*
5NRG|1|X|G|1375
5NRG|1|X|G|1376
5NRG|1|X|U|1377
5NRG|1|X|U|1378
5NRG|1|X|A|1379
5NRG|1|X|G|1380
*
5NRG|1|X|C|1441
5NRG|1|X|C|1442
*
5NRG|1|X|G|1641
5NRG|1|X|C|1642
5NRG|1|X|C|1643
5NRG|1|X|C|1644
5NRG|1|X|G|1645
5NRG|1|X|U|1646
5NRG|1|X|A|1647

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain Q

50S ribosomal protein L23