J4_5NRG_009

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NRG_009 not in the Motif Atlas

Homologous match to J4_4WF9_009

Geometric discrepancy: 0.0941

The information below is about J4_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5NRG|1|X|G|2670
5NRG|1|X|A|2671
5NRG|1|X|G|2672
5NRG|1|X|C|2673
*
5NRG|1|X|G|2701
5NRG|1|X|A|2702
5NRG|1|X|C|2703
*
5NRG|1|X|G|2758
5NRG|1|X|G|2759
5NRG|1|X|A|2760
5NRG|1|X|C|2761
5NRG|1|X|G|2762
*
5NRG|1|X|C|2796
5NRG|1|X|C|2797
5NRG|1|X|C|2798

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain H

50S ribosomal protein L14