J4_5NWY_001

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

5NWY|1|0|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NWY_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1744

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5NWY|1|0|G|115
5NWY|1|0|A|116
5NWY|1|0|G|117
5NWY|1|0|U|118
5NWY|1|0|A|119
5NWY|1|0|A|120
5NWY|1|0|U|121
5NWY|1|0|G|122
*
5NWY|1|0|U|239
5NWY|1|0|G|240
*
5NWY|1|0|C|286
5NWY|1|0|U|287
5NWY|1|0|A|288
5NWY|1|0|G|289
*
5NWY|1|0|C|311
5NWY|1|0|C|312

Current chains

Chain 0

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S16

Chain G

30S ribosomal protein S17