J4_5NWY_002

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5NWY|1|0|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NWY_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1563

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5NWY|1|0|G|142
5NWY|1|0|A|143
5NWY|1|0|G|144
*
5NWY|1|0|C|178
5NWY|1|0|A|179
5NWY|1|0|U|180
5NWY|1|0|A|181
5NWY|1|0|A|182
5NWY|1|0|C|183
5NWY|1|0|G|184
*
5NWY|1|0|C|193
5NWY|1|0|C|194
5NWY|1|0|A|195
5NWY|1|0|A|196
5NWY|1|0|A|197
5NWY|1|0|G|198
*
5NWY|1|0|U|219
5NWY|1|0|G|220
5NWY|1|0|C|221

Current chains

Chain 0

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S20