J4_5NWY_004
3D structure
- PDB id
- 5NWY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUCG*CAC*GCAUUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 5NWY|1|M|U|8, 5NWY|1|M|U|46, 5NWY|1|M|C|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5NWY_004 not in the Motif Atlas
- Homologous match to J4_1IL2_001
- Geometric discrepancy: 0.2589
- The information below is about J4_1IL2_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
5NWY|1|M|A|7
5NWY|1|M|U|8
5NWY|1|M|C|9
5NWY|1|M|G|10
*
5NWY|1|M|C|24
5NWY|1|M|A|25
5NWY|1|M|C|26
*
5NWY|1|M|G|42
5NWY|1|M|C|43
5NWY|1|M|A|44
5NWY|1|M|U|45
5NWY|1|M|U|46
5NWY|1|M|C|47
5NWY|1|M|C|48
*
5NWY|1|M|G|64
5NWY|1|M|U|65
Current chains
- Chain M
- Gln-tRNA
Nearby chains
- Chain 0
- Small subunit ribosomal RNA; SSU rRNA
- Chain C
- 30S ribosomal protein S13
- Chain N
- Large subunit ribosomal RNA; LSU rRNA
- Chain Z
- 50S ribosomal protein L16
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