J4_5NWY_005

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5NWY|1|N|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NWY_005 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1102

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5NWY|1|N|C|268
5NWY|1|N|C|269
*
5NWY|1|N|G|370
5NWY|1|N|A|371
5NWY|1|N|G|372
5NWY|1|N|U|373
5NWY|1|N|A|374
5NWY|1|N|G|375
*
5NWY|1|N|U|399
5NWY|1|N|G|400
5NWY|1|N|A|401
5NWY|1|N|A|402
5NWY|1|N|U|403
5NWY|1|N|A|404
5NWY|1|N|U|405
5NWY|1|N|G|406
*
5NWY|1|N|C|421
5NWY|1|N|A|422
5NWY|1|N|A|423
5NWY|1|N|G|424

Current chains

Chain N

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L9

Chain k

50S ribosomal protein L28