J4_5O2R_001

3D structure

PDB id

5O2R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5O2R|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5O2R_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1659

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5O2R|1|A|C|268
5O2R|1|A|C|269
*
5O2R|1|A|G|370
5O2R|1|A|A|371
5O2R|1|A|G|372
5O2R|1|A|U|373
5O2R|1|A|A|374
5O2R|1|A|G|375
*
5O2R|1|A|U|399
5O2R|1|A|G|400
5O2R|1|A|A|401
5O2R|1|A|A|402
5O2R|1|A|U|403
5O2R|1|A|A|404
5O2R|1|A|U|405
5O2R|1|A|G|406
*
5O2R|1|A|C|421
5O2R|1|A|A|422
5O2R|1|A|A|423
5O2R|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28