J4_5O2R_011

3D structure

PDB id

5O2R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

5O2R|1|a|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5O2R_011 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.243

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5O2R|1|a|G|115
5O2R|1|a|A|116
5O2R|1|a|G|117
5O2R|1|a|U|118
5O2R|1|a|A|119
5O2R|1|a|A|120
5O2R|1|a|U|121
5O2R|1|a|G|122
*
5O2R|1|a|U|239
5O2R|1|a|G|240
*
5O2R|1|a|C|286
5O2R|1|a|U|287
5O2R|1|a|A|288
5O2R|1|a|G|289
*
5O2R|1|a|C|311
5O2R|1|a|C|312

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17