J4_5O2R_012

3D structure

PDB id

5O2R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5O2R|1|a|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5O2R_012 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1973

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5O2R|1|a|G|142
5O2R|1|a|A|143
5O2R|1|a|G|144
*
5O2R|1|a|C|178
5O2R|1|a|A|179
5O2R|1|a|U|180
5O2R|1|a|A|181
5O2R|1|a|A|182
5O2R|1|a|C|183
5O2R|1|a|G|184
*
5O2R|1|a|C|193
5O2R|1|a|C|194
5O2R|1|a|A|195
5O2R|1|a|A|196
5O2R|1|a|A|197
5O2R|1|a|G|198
*
5O2R|1|a|U|219
5O2R|1|a|G|220
5O2R|1|a|C|221

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20