J4_5O61_002

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GGAAA*UGCC*GAC*GGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5O61_002 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.118

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

5O61|1|A|G|378
5O61|1|A|G|379
5O61|1|A|A|380
5O61|1|A|A|381
5O61|1|A|A|382
*
5O61|1|A|U|398
5O61|1|A|G|399
5O61|1|A|C|400
5O61|1|A|C|401
*
5O61|1|A|G|405
5O61|1|A|A|406
5O61|1|A|C|407
*
5O61|1|A|G|419
5O61|1|A|G|420
5O61|1|A|U|421
5O61|1|A|A|422
5O61|1|A|C|423

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24