J4_5O61_008
3D structure
- PDB id
- 5O61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The complete structure of the Mycobacterium smegmatis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.31 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 5O61|1|A|U|2195
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5O61_008 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.0909
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
5O61|1|A|C|2050
5O61|1|A|U|2051
5O61|1|A|G|2052
*
5O61|1|A|C|2129
5O61|1|A|G|2130
*
5O61|1|A|C|2148
5O61|1|A|C|2149
5O61|1|A|U|2150
5O61|1|A|A|2151
5O61|1|A|A|2152
5O61|1|A|G|2153
5O61|1|A|G|2154
5O61|1|A|U|2155
5O61|1|A|A|2156
5O61|1|A|G|2157
*
5O61|1|A|C|2191
5O61|1|A|G|2192
5O61|1|A|A|2193
5O61|1|A|A|2194
5O61|1|A|U|2195
5O61|1|A|G|2196
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain BA
- Small subunit ribosomal RNA; SSU rRNA
- Chain BB
- Conserved domain protein
- Chain BW
- Transfer RNA; tRNA
- Chain C
- 50S ribosomal protein L2
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