J4_5O61_013
3D structure
- PDB id
- 5O61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The complete structure of the Mycobacterium smegmatis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.31 Å
Loop
- Sequence
- GAG*CGAAAG*CCGUAAACGGUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 5O61|1|BA|A|556, 5O61|1|BA|A|795
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5O61_013 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0703
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
5O61|1|BA|G|555
5O61|1|BA|A|556
5O61|1|BA|G|557
*
5O61|1|BA|C|744
5O61|1|BA|G|745
5O61|1|BA|A|746
5O61|1|BA|A|747
5O61|1|BA|A|748
5O61|1|BA|G|749
*
5O61|1|BA|C|790
5O61|1|BA|C|791
5O61|1|BA|G|792
5O61|1|BA|U|793
5O61|1|BA|A|794
5O61|1|BA|A|795
5O61|1|BA|A|796
5O61|1|BA|C|797
5O61|1|BA|G|798
5O61|1|BA|G|799
5O61|1|BA|U|800
5O61|1|BA|G|801
*
5O61|1|BA|C|861
5O61|1|BA|C|862
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain BB
- Conserved domain protein
- Chain BH
- 30S ribosomal protein S8
- Chain BL
- 30S ribosomal protein S12
- Chain BO
- 30S ribosomal protein S15
- Chain BQ
- 30S ribosomal protein S17
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