J4_5OBM_001
3D structure
- PDB id
- 5OBM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Gentamicin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 5OBM|1|1|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5OBM_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1059
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
5OBM|1|1|U|112
5OBM|1|1|C|113
*
5OBM|1|1|G|267
5OBM|1|1|A|268
5OBM|1|1|G|269
5OBM|1|1|U|270
5OBM|1|1|C|271
5OBM|1|1|G|272
*
5OBM|1|1|C|293
5OBM|1|1|U|294
5OBM|1|1|A|295
5OBM|1|1|A|296
5OBM|1|1|G|297
5OBM|1|1|U|298
5OBM|1|1|G|299
*
5OBM|1|1|U|316
5OBM|1|1|A|317
5OBM|1|1|A|318
5OBM|1|1|A|319
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain M3
- 60S ribosomal protein L13-A
- Chain M5
- 60S ribosomal protein L15-A
- Chain O5
- 60S ribosomal protein L35-A
- Chain O6
- 60S ribosomal protein L36-A
Coloring options: