J4_5OT7_007

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGAUAGCU*GCAGGG*CCGUGUCC*GUCCG

Length

28 nucleotides

Bulged bases

5OT7|1|2|U|8, 5OT7|1|2|A|26, 5OT7|1|2|U|47, 5OT7|1|2|U|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OT7|1|2|C|4
5OT7|1|2|G|5
5OT7|1|2|G|6
5OT7|1|2|A|7
5OT7|1|2|U|8
5OT7|1|2|A|9
5OT7|1|2|G|10
5OT7|1|2|C|11
5OT7|1|2|U|12
*
5OT7|1|2|G|24
5OT7|1|2|C|25
5OT7|1|2|A|26
5OT7|1|2|G|27
5OT7|1|2|G|28
5OT7|1|2|G|29
*
5OT7|1|2|C|42
5OT7|1|2|C|43
5OT7|1|2|G|44
5OT7|1|2|U|45
5OT7|1|2|G|46
5OT7|1|2|U|47
5OT7|1|2|C|48
5OT7|1|2|C|49
*
5OT7|1|2|G|65
5OT7|1|2|U|66
5OT7|1|2|C|67
5OT7|1|2|C|68
5OT7|1|2|G|69

Current chains

Chain 2

tRNA-Phe

Nearby chains

Chain 1

Small subunit ribosomal RNA; SSU rRNA

Chain 4

Large subunit ribosomal RNA; LSU rRNA

Chain L

30S ribosomal protein S13

Chain R

30S ribosomal protein S19

Chain b

50S ribosomal protein L33