J4_5OT7_010

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAGCGGGCCGCACGCGGCCCGCAAAG

Length

42 nucleotides

Bulged bases

5OT7|1|4|G|654|||D, 5OT7|1|4|C|654|||I, 5OT7|1|4|A|654|||J, 5OT7|1|4|C|654|||K, 5OT7|1|4|G|654|||O

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OT7|1|4|C|601
5OT7|1|4|G|602
5OT7|1|4|A|603
5OT7|1|4|G|604
*
5OT7|1|4|C|624
5OT7|1|4|G|625
5OT7|1|4|U|626
5OT7|1|4|A|627
5OT7|1|4|G|628
*
5OT7|1|4|C|635
5OT7|1|4|G|636
5OT7|1|4|A|637
5OT7|1|4|G|638
*
5OT7|1|4|C|650
5OT7|1|4|G|651
5OT7|1|4|C|652
5OT7|1|4|A|653
5OT7|1|4|A|654
5OT7|1|4|G|654|||A
5OT7|1|4|C|654|||B
5OT7|1|4|G|654|||C
5OT7|1|4|G|654|||D
5OT7|1|4|G|654|||E
5OT7|1|4|C|654|||F
5OT7|1|4|C|654|||G
5OT7|1|4|G|654|||H
5OT7|1|4|C|654|||I
5OT7|1|4|A|654|||J
5OT7|1|4|C|654|||K
5OT7|1|4|G|654|||L
5OT7|1|4|C|654|||M
5OT7|1|4|G|654|||N
5OT7|1|4|G|654|||O
5OT7|1|4|C|654|||P
5OT7|1|4|C|654|||Q
5OT7|1|4|C|654|||R
5OT7|1|4|G|654|||S
5OT7|1|4|C|654|||T
5OT7|1|4|A|654|||U
5OT7|1|4|A|654|||V
5OT7|1|4|A|655
5OT7|1|4|G|656

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L35

Chain i

50S ribosomal protein L4

Chain q

50S ribosomal protein L15