J4_5OT7_012

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGUUC*GGUUAG*CU*ACCCGUACC

Length

23 nucleotides

Bulged bases

5OT7|1|4|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OT7|1|4|G|1309
5OT7|1|4|G|1310
5OT7|1|4|G|1311
5OT7|1|4|U|1312
5OT7|1|4|U|1313
5OT7|1|4|C|1314
*
5OT7|1|4|G|1338
5OT7|1|4|G|1339
5OT7|1|4|U|1340
5OT7|1|4|U|1341
5OT7|1|4|A|1342
5OT7|1|4|G|1343
*
5OT7|1|4|C|1404
5OT7|1|4|U|1405
*
5OT7|1|4|A|1597
5OT7|1|4|C|1598
5OT7|1|4|C|1599
5OT7|1|4|C|1600
5OT7|1|4|G|1601
5OT7|1|4|U|1602
5OT7|1|4|A|1603
5OT7|1|4|C|1604
5OT7|1|4|C|1605

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L34

Chain y

50S ribosomal protein L23