J4_5T2A_003
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAAC*GAGAACC*GAAAUU*AGAC
- Length
- 22 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T2A|1|A|G|1636
5T2A|1|A|A|1637
5T2A|1|A|A|1638
5T2A|1|A|A|1639
5T2A|1|A|C|1640
*
5T2A|1|A|G|1742
5T2A|1|A|A|1743
5T2A|1|A|G|1744
5T2A|1|A|A|1745
5T2A|1|A|A|1746
5T2A|1|A|C|1747
5T2A|1|A|C|1748
*
5T2A|1|A|G|1768
5T2A|1|A|A|1769
5T2A|1|A|A|1770
5T2A|1|A|A|1771
5T2A|1|A|U|1772
5T2A|1|A|U|1773
*
5T2A|1|B|A|10
5T2A|1|B|G|11
5T2A|1|B|A|12
5T2A|1|B|C|13
Current chains
- Chain A
- LSU-alpha
- Chain B
- LSU-beta
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain E
- srRNA1
- Chain V
- uL23
- Chain h
- eL34
- Chain n
- eL38
- Chain o
- eL39
Coloring options: