J4_5T2A_004
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCAAAAUAG*UG*UGCUUACGGCGG*CUC
- Length
- 26 nucleotides
- Bulged bases
- 5T2A|1|B|G|304
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T2A|1|B|G|89
5T2A|1|B|C|90
5T2A|1|B|A|91
5T2A|1|B|A|92
5T2A|1|B|A|93
5T2A|1|B|A|94
5T2A|1|B|U|95
5T2A|1|B|A|96
5T2A|1|B|G|97
*
5T2A|1|B|U|121
5T2A|1|B|G|122
*
5T2A|1|B|U|294
5T2A|1|B|G|295
5T2A|1|B|C|296
5T2A|1|B|U|297
5T2A|1|B|U|298
5T2A|1|B|A|299
5T2A|1|B|C|300
5T2A|1|B|G|301
5T2A|1|B|G|302
5T2A|1|B|C|303
5T2A|1|B|G|304
5T2A|1|B|G|305
*
5T2A|1|B|C|514
5T2A|1|B|U|515
5T2A|1|B|C|516
Current chains
- Chain B
- LSU-beta
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain G
- Large subunit ribosomal RNA; LSU rRNA
- Chain H
- srRNA4
- Chain R
- eL19
- Chain U
- uL14
- Chain W
- eL24
- Chain d
- uL3
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