J4_5T2A_006
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 5T2A|1|B|U|497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5T2A_006 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.0818
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T2A|1|B|C|375
5T2A|1|B|U|376
5T2A|1|B|G|377
*
5T2A|1|B|C|431
5T2A|1|B|G|432
*
5T2A|1|B|C|450
5T2A|1|B|U|451
5T2A|1|B|U|452
5T2A|1|B|A|453
5T2A|1|B|A|454
5T2A|1|B|G|455
5T2A|1|B|G|456
5T2A|1|B|U|457
5T2A|1|B|A|458
5T2A|1|B|G|459
*
5T2A|1|B|U|493
5T2A|1|B|G|494
5T2A|1|B|A|495
5T2A|1|B|A|496
5T2A|1|B|U|497
5T2A|1|B|G|498
Current chains
- Chain B
- LSU-beta
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain c
- uL2
Coloring options: