J4_5T2A_007

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAAG*UUG*CU*AAG

Length

13 nucleotides

Bulged bases

5T2A|1|B|A|1020

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2A|1|B|C|1017
5T2A|1|B|U|1018
5T2A|1|B|A|1019
5T2A|1|B|A|1020
5T2A|1|B|G|1021
*
5T2A|1|B|U|1075
5T2A|1|B|U|1076
5T2A|1|B|G|1077
*
5T2A|1|B|C|1105
5T2A|1|B|U|1106
*
5T2A|1|B|A|1115
5T2A|1|B|A|1116
5T2A|1|B|G|1117

Current chains

Chain B

LSU-beta

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain S

eL21

Chain r

eL42

Chain s

uL18