J4_5T2C_001

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

5T2C|1|A|C|216, 5T2C|1|A|C|217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2C|1|A|C|196
5T2C|1|A|A|197
5T2C|1|A|A|198
5T2C|1|A|G|199
*
5T2C|1|A|C|215
5T2C|1|A|C|216
5T2C|1|A|C|217
5T2C|1|A|A|218
5T2C|1|A|G|219
5T2C|1|A|C|220
5T2C|1|A|C|221
5T2C|1|A|C|222
*
5T2C|1|A|G|226
5T2C|1|A|A|227
5T2C|1|A|C|228
*
5T2C|1|A|G|240
5T2C|1|A|G|241
5T2C|1|A|U|242
5T2C|1|A|A|243
5T2C|1|A|G|244

Current chains

Chain A

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L4

Chain S

60S ribosomal protein L26