J4_5T2C_004

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAGAUG*CAGUG*CGACC*GAGGGUGUAAAUCUC

Length

32 nucleotides

Bulged bases

5T2C|1|A|C|2768, 5T2C|1|A|U|2769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2C|1|A|G|2549
5T2C|1|A|G|2550
5T2C|1|A|A|2551
5T2C|1|A|G|2552
5T2C|1|A|A|2553
5T2C|1|A|U|2554
5T2C|1|A|G|2555
*
5T2C|1|A|C|2572
5T2C|1|A|A|2573
5T2C|1|A|G|2574
5T2C|1|A|U|2575
5T2C|1|A|G|2576
*
5T2C|1|A|C|2585
5T2C|1|A|G|2586
5T2C|1|A|A|2587
5T2C|1|A|C|2588
5T2C|1|A|C|2589
*
5T2C|1|A|G|2756
5T2C|1|A|A|2757
5T2C|1|A|G|2758
5T2C|1|A|G|2759
5T2C|1|A|G|2760
5T2C|1|A|U|2761
5T2C|1|A|G|2762
5T2C|1|A|U|2763
5T2C|1|A|A|2764
5T2C|1|A|A|2765
5T2C|1|A|A|2766
5T2C|1|A|U|2767
5T2C|1|A|C|2768
5T2C|1|A|U|2769
5T2C|1|A|C|2770

Current chains

Chain A

28S rRNA

Nearby chains

Chain T

60S ribosomal protein L27

Chain a

60S ribosomal protein L34