J4_5T2C_011
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAGUUAAAAAG*CGAAAG*CCAUAAACGAUGC*GUUCCG
- Length
- 36 nucleotides
- Bulged bases
- 5T2C|1|AA|U|666, 5T2C|1|AA|U|667, 5T2C|1|AA|A|668, 5T2C|1|AA|A|672, 5T2C|1|AA|A|1083, 5T2C|1|AA|C|1085, 5T2C|1|AA|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T2C|1|AA|C|663
5T2C|1|AA|A|664
5T2C|1|AA|G|665
5T2C|1|AA|U|666
5T2C|1|AA|U|667
5T2C|1|AA|A|668
5T2C|1|AA|A|669
5T2C|1|AA|A|670
5T2C|1|AA|A|671
5T2C|1|AA|A|672
5T2C|1|AA|G|673
*
5T2C|1|AA|C|1032
5T2C|1|AA|G|1033
5T2C|1|AA|A|1034
5T2C|1|AA|A|1035
5T2C|1|AA|A|1036
5T2C|1|AA|G|1037
*
5T2C|1|AA|C|1078
5T2C|1|AA|C|1079
5T2C|1|AA|A|1080
5T2C|1|AA|U|1081
5T2C|1|AA|A|1082
5T2C|1|AA|A|1083
5T2C|1|AA|A|1084
5T2C|1|AA|C|1085
5T2C|1|AA|G|1086
5T2C|1|AA|A|1087
5T2C|1|AA|U|1088
5T2C|1|AA|G|1089
5T2C|1|AA|C|1090
*
5T2C|1|AA|G|1159
5T2C|1|AA|U|1160
5T2C|1|AA|U|1161
5T2C|1|AA|C|1162
5T2C|1|AA|C|1163
5T2C|1|AA|G|1164
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain AD
- 40S ribosomal protein S23
- Chain AE
- 40S ribosomal protein S26
- Chain AJ
- 40S ribosomal protein S2
- Chain AN
- 40S ribosomal protein S13
- Chain AO
- 40S ribosomal protein S14
- Chain AP
- 40S ribosomal protein S15a
- Chain Aw
- 40S ribosomal protein S11
- Chain h
- 60S Ribosomal protein L41
- Chain j
- 60S ribosomal protein L37a
Coloring options: